Picazo, F., Vilmi, A., Aalto, J., Soininen, J., Casamayor, E., Liu, Y., Wu, Q., Ren, L., Zhou, J., Shen, J. & Wang, J. (2020) Climate mediates continental scale patterns of stream microbial functional diversity. Microbiome, in press.

Zou, W., Zhu, G., Cai, Y., Vilmi, A., Xu, H., Zhu, M., Gong, Z., Zhang, Y. & Qin, B. (2020) Relationships between nutrient, chlorophyll a and Secchi depth in lakes of the Chinese Eastern Plain ecoregion: implications for eutrophication management. Journal of Environmental Management, in press.

Vilmi, A., Zhao, W., Picazo, F., Li, M., Heino, J., Soininen, J. & Wang, J. (2020) Ecological processes underlying community assembly of aquatic bacteria and macroinvertebrates under contrasting climates on the Tibetan Plateau. Science of The Total Environment 702: 134974.

Rocha, M.P., Bini, L.M., Grönroos, M., Hjort, J., Lindholm, M., Karjalainen, S-M., Tolonen, K.E., Heino, J. (2019) Correlates of different facets and components of beta diversity in stream organisms. Oecologia, 191: 919–929.

Tolonen, K.E., Picazo, F., Vilmi, A., Datry, T., Paril, P., Rocha, M.P., Stubbington, R. & Heino, J. (2019) Parallels and contrasts between intermittently freezing and drying streams: from individual adaptations to biodiversity variation. Freshwater Biology 64: 1679-1691.

Vilmi, A., Karjalainen, S.M., Wang, J. & Heino, J. (2019) Using traits to explain interspecific variation in diatom occupancy and abundance across lakes and streams. Journal of Biogeography 46: 1419-1428.

Vilmi, A., Tolonen, K.T., Karjalainen, S.M. & Heino, J. (2019) Niche position drives interspecific variation in occupancy and abundance in a highly-connected lake system. Ecological Indicators 99: 159-166.

Rocha, M.P., Bini, L.M., Domisch, S., Tolonen, K.T., Jyrkänkallio-Mikkola, J., Soininen, J., Hjort, J. & Heino, J. (2018) Local environment and space drive multiple facets of stream macroinvertebrate beta diversity. Journal of Biogeography 45: 2744-2754.

Zhang, Y., Cheng, L., Tolonen, K.E., Yin, H., Gao, J., Zhang, Z., Li, K. & Cai, Y. (2018) Substrate degradation and nutrient enrichment structuring macroinvertebrate assemblages in agriculturally dominated Lake Chaohu Basins, China. Science of The Total Environment 627: 57-66.

Tolonen, K.T., Cai, Y., Vilmi, A., Karjalainen, S.M., Sutela, T. & Heino, J. (2018) Environmental filtering and spatial effects on metacommunity organisation differ among littoral macroinvertebrate groups deconstructed by biological traits. Aquatic Ecology 52: 119-131.

Rocha, M.P., Bini, L.M., Siqueira, T., Hjort, J., Grönroos, M., Lindholm, M., Karjalainen, S.M. & Heino, J. (2018) Predicting occupancy and abundance by niche position, niche breadth and body size in stream organisms. Oecologia 186: 205-216.

Tolonen, K.E., Leinonen, K., Erkinaro, J. & Heino, J. (2018) Ecological uniqueness of macroinvertebrate communities in high-latitude streams is a consequence of deterministic environmental filtering processes. Aquatic Ecology 52: 17-33.

Cai, Y., Xu, H., Vilmi, A., Tolonen, K.T., Tang, X., Qin, B., Gong, Z. & Heino, J. (2017) Relative roles of spatial processes, natural factors and anthropogenic stressors in structuring a lake macroinvertebrate metacommunity. Science of the Total Environment 601: 1702-1711.

Tolonen, K.T., Vilmi, A., Karjalainen, S.M., Hellsten, S. & Heino J. (2017) Do different facets of littoral macroinvertebrate diversity show congruent patterns in a large lake system? Community Ecology 18: 109-116.

Vilmi, A., Alahuhta, J., Hjort, J., Kärnä, O-M., Leinonen, K., Rocha, Mariana P., Tolonen, K.E., Tolonen, K., Heino, J. (2017) Geography of global change and species richness in the North. Environmental Reviews, 25: 184–192

Vilmi, A., Karjalainen, S.M. & Heino, J. (2017) Ecological uniqueness of stream and lake diatom communities shows different macroecological patterns. Diversity and Distributions 23: 1042-1053.

Rocha, M.P., Heino, J., Velho, L.F.M., Lansac-Tôha, F.M. & Lansac-Tôha, F.A. (2017) Fine spatial grain, large spatial extent and biogeography of macrophyte-associated cladoceran communities across Neotropical floodplains. Freshwater Biology 62: 559-569.

Vilmi, A., Alahuhta, J., Hjort, J., Kärnä, O.-M., Leinonen, K., Rocha, M.P., Tolonen, K.E., Tolonen, K.T. & Heino, J. (2017) Geography of global change and species richness in the North. Environmental Reviews 25: 184-192.

Langenheder, S., Wang, J., Karjalainen, S.M., Laamanen, T., Tolonen, K.T., Vilmi, A. & Heino, J. (2017) Bacterial metacommunity organization in a highly-connected aquatic system. FEMS Microbiology Ecology 93: fiw225.

Vilmi, A., Tolonen, K.T., Karjalainen, S.M. & Heino, J. (2017) Metacommunity structuring in a highly-connected aquatic system: effects of dispersal, abiotic environment and grazing pressure on microalgal guilds. Hydrobiologia 790: 125-140.

Tolonen, K.T., Vilmi, A., Karjalainen, S.M., Hellsten, S., Sutela, T. & Heino, J. (2017) Ignoring spatial effects results in inadequate models for variation in littoral macroinvertebrate diversity. Oikos 126: 852–862.

Tolonen, K.E., Leinonen, K., Marttila, H., Erkinaro, J. & Heino, J. (2017) Environmental predictability of taxonomic and functional community composition in high-latitude streams. Freshwater Biology 62: 1-16.

Tolonen, K.E., Tokola, L., Grönroos, M., Hjort, J., Kärnä, O.-M., Erkinaro, J. & Heino, J. (2016) Hierarchical decomposition of trait patterns of macroinvertebrate communities in subarctic streams. Freshwater Science 35: 1032-1048.

Vilmi, A., Karjalainen, S.M., Hellsten, S. & Heino, J. (2016) Bioassessment in a metacommunity context: are diatom communities structured solely by species sorting? Ecological Indicators 62: 86-94.

Vilmi, A., Karjalainen, S.M., Kuoppala, M., Tolonen, K.T. & Heino, J. (2016) Taxonomic distinctness along nutrient gradients: more diverse, less diverse or not different from random? Ecological Indicators 61: 1033-1041.
Vilmi, A., Karjalainen, S.M., Nokela, T., Tolonen, K.T. & Heino, J. (2016) Unravelling the drivers of aquatic communities using disparate organismal groups and different taxonomic levels. Ecological Indicators 60: 108-118.

Vilmi, A., Karjalainen, S.M., Landeiro, V.L. & Heino, J. (2015) Freshwater diatoms as environmental indicators: evaluating the effects of eutrophication using species morphology and biological indices. Environmental Monitoring and Assessment 187: 243-252.